Package: AmoudSurv 0.1.0

AmoudSurv: Tractable Parametric Odds-Based Regression Models

Fits tractable fully parametric odds-based regression models for survival data, including proportional odds (PO), accelerated failure time (AFT), accelerated odds (AO), and General Odds (GO) models in overall survival frameworks. Given at least an R function specifying the survivor, hazard rate and cumulative distribution functions, any user-defined parametric distribution can be fitted. We applied and evaluated a minimum of seventeen (17) various baseline distributions that can handle different failure rate shapes for each of the four different proposed odds-based regression models. For more information see Bennet et al., (1983) <doi:10.1002/sim.4780020223>, and Muse et al., (2022) <doi:10.1016/j.aej.2022.01.033>.

Authors:Abdisalam Hassan Muse [aut, cre], Samuel Mwalili [aut, ctb], Oscar Ngesa [aut, ctb], Christophe Chesneau [aut, ctb]

AmoudSurv_0.1.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
AmoudSurv/json (API)

# Install 'AmoudSurv' in R:
install.packages('AmoudSurv', repos = c('https://abdisalammuse.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • alloauto - Leukemia data set
  • bmt - Bone Marrow Transplant (bmt) data set
  • gastric - Gastric data set
  • larynx - Larynx Cancer-Patients data set

On CRAN:

Conda:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.00 score 258 downloads 56 exports 55 dependencies

Last updated from:0339c6e029. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK172
source / vignettesOK162
linux-release-x86_64OK156
macos-release-arm64OK140
macos-oldrel-arm64OK151
windows-develOK113
windows-releaseOK126
windows-oldrelOK125
wasm-releaseOK111

Exports:MLEAFTMLEAOMLEGOMLEPOpASLLpATLLpCLLpdGGpEWpGpGGpGLLpLLpLNpMKWpMLLpNGLLpPGWpSCLLpSLLpTLLpWrASLLrATLLrCLLrEWrGrGGrGLLrLLrLNrMKWrMLLrNGLLrPGWrSCLLrSLLrTLLrWsASLLsATLLsCLLsEWsGsGGsGLLsLLsLNsMKWsMLLSNGLLsPGWsSCLLsSLLsTLLsW

Dependencies:AHSurvassertthatbbmlebdsmatrixclicpp11data.tabledeSolvedplyrfarverfastGHQuadflexsurvgenericsggplot2gluegtableisobandlabelinglatticelifecyclelsodamagrittrMASSMatrixmgcvmstatemuhazmvtnormnlmenumDerivpillarpkgconfigpracmapurrrquadprogR6RColorBrewerRcppRcppArmadillorlangrootSolverstpm2S7scalesstatmodstringistringrsurvivaltibbletidyrtidyselectutf8vctrsviridisLitewithr

Readme and manuals

Help Manual

Help pageTopics
Leukemia data setalloauto
Bone Marrow Transplant (bmt) data setbmt
Gastric data setgastric
Larynx Cancer-Patients data setlarynx
Accelerated Failure Time (AFT) Model.MLEAFT
Accelerated Odds (AO) Model.MLEAO
General Odds (GO) Model.MLEGO
Proportional Odds (PO) model.MLEPO
Arcsine-Log-logistic (ASLL) Cumulative Distribution Function.pASLL
Arctangent-Log-logistic (ATLL) Cumulative Distribution Function.pATLL
Cosine-Log-logistic (SLL) Cumulative Distribution Function.pCLL
Generalised Gamma (GG) Probability Density Function.pdGG
Exponentiated Weibull (EW) Cumulative Distribution Function.pEW
Gamma (G) Cumulative Distribution Function.pG
Generalised Gamma (GG) Cumulative Distribution Function.pGG
Generalized Log-logistic (GLL) cumulative distribution function.pGLL
Log-logistic (LL) Cumulative Distribution Function.pLL
Lognormal (LN) Cumulative Distribution Function.pLN
Modified Kumaraswamy Weibull (MKW) Cumulative Distribution Function.pMKW
Modified Log-logistic (MLL) cumulative distribution function.pMLL
New Generalized Log-logistic (NGLL) cumulative distribution function.pNGLL
Power Generalised Weibull (PGW) cumulative distribution function.pPGW
Secant-log-logistic (SCLL) Cumulative Distribution Function.pSCLL
Sine-Log-logistic (SLL) Cumulative Distribution Function.pSLL
Tangent-Log-logistic (TLL) Cumulative Distribution Function.pTLL
Weibull (W) Cumulative Distribution Function.pW
Arcsine-Log-logistic (ASLL) Hazard Rate Function.rASLL
Arctangent-Log-logistic (ATLL) Hazard Function.rATLL
Cosine-Log-logistic (CLL) Hazard Function.rCLL
Exponentiated Weibull (EW) Hazard Function.rEW
Gamma (G) Hazard Function.rG
Generalised Gamma (GG) Hazard Function.rGG
Generalized Log-logistic (GLL) hazard function.rGLL
Log-logistic (LL) Hazard Function.rLL
Lognormal (LN) Hazard Function.rLN
Modified Kumaraswamy Weibull (MKW) Hazard Function.rMKW
Modified Log-logistic (MLL) hazard function.rMLL
New Generalized Log-logistic (NGLL) hazard function.rNGLL
Power Generalised Weibull (PGW) hazard function.rPGW
Secant-log-logistic (SCLL) Hazard Function.rSCLL
Sine-Log-logistic (SLL) Hazard Function.rSLL
Tangent-Log-logistic (TLL) Hazard Function.rTLL
Weibull (W) Hazard Function.rW
Arcsine-Log-logistic (ASLL) Survival Function.sASLL
Arctangent-Log-logistic (ATLL) Survivor Function.sATLL
Cosine-Log-logistic (CLL) Survivor Function.sCLL
Exponentiated Weibull (EW) Survivor Function.sEW
Gamma (G) Survivor Function.sG
Generalised Gamma (GG) Survival Function.sGG
Generalized Log-logistic (GLL) survivor function.sGLL
Log-logistic (LL) Survivor Function.sLL
Lognormal (LN) Survivor Hazard Function.sLN
Modified Kumaraswamy Weibull (MKW) Survivor Function.sMKW
Modified Log-logistic (MLL) survivor function.sMLL
New Generalized Log-logistic (NGLL) survivor function.SNGLL
Power Generalised Weibull (PGW) survivor function.sPGW
Secant-log-logistic (SCLL) Survivor Function.sSCLL
Sine-Log-logistic (SLL) Survivor Function.sSLL
Tangent-Log-logistic (TLL) Survivor Function.sTLL
Weibull (W) Survivor Function.sW